Rice University

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Seminar

Center for Theoretical Biological Physics
Bioengineering
Chemical and Biomolecular Engineering
Chemistry
Dean of Engineering
Dean of Natural Sciences
Physics & Astronomy

Speaker: Carlos Bustamante
Professor
Stanford School of Medicine

“Division of Labor Among the Subunits of a Highly Coordinated Ring ATPase”

Tuesday, April 11, 2017
12:30 PM  to 1:30 PM

1060 A/B  BioScience Research Collaborative
Rice University
6500 Main St.
Houston, Texas, USA

Abstract: As part of their infection cycle, many viruses must package their newly replicated genomes inside a protein capsid. Bacteriophage phi29 packages its 6.6 mm long double-stranded DNA using a pentameric ring nano motor that belongs to the ASCE (Additional Strand, Conserved E) superfamily of ATPases. A number of fundamental questions remain as to the coordination of the various subunits in these multimeric rings. The portal motor in bacteriophage phi29 is ideal to investigate these questions and is a remarkable machine that must overcome entropic, electrostatic, and DNA bending energies to package its genome to near-crystalline density inside the capsid. Using optical tweezers, we find that this motor can work against loads of up to ~55 picoNewtons on average, making it one of the strongest molecular motors ever reported. We establish the force-velocity relationship of the motor. Interestingly, the packaging rate decreases as the prohead fills, indicating that an internal pressure builds up due to DNA compression attaining the value of ~6 MegaPascals at the end of the packaging. This pressure, we show, is used as part of the mechanism of DNA injection in the next infection cycle. We have used high-resolution optical tweezers to characterize the steps and intersubunit coordination of the pentameric ring ATPase responsible for DNA packaging in bacteriophage Phi29. By using non-hydrolyzable ATP analogs and stabilizers of the ADP bound to the motor, we establish where DNA binding, hydrolysis, and phosphate and ADP release occur relative to translocation. We show that while only 4 of the subunits translocate DNA, all 5 bind and hydrolyze ATP, suggesting that the fifth subunit fulfills a regulatory function. Finally, we show that the motor not only can generate force but also torque. We characterize the role played by the special subunit in this process and identify this the symmetry-breaking mechanism. These results represent the most complete studies done to date on these widely distribute class of ring nano motors.

Biography of Carlos Bustamante:
Carlos J. Bustamante is the Professor of Molecular and Cell Biology, Physics, and Chemistry at the University of California, Berkeley and a Howard Hughes Medical Institute Investigator. Dr. Bustamante received his B.S. degree in biology from the Universidad Peruana Cayetano Heredia; his M.S. degree in biochemistry from the Universidad Nacional Mayor de San Marcos and his Ph.D. in biophysics from the University of California, Berkeley. Dr. Bustamante is a Fellow of the American Physical Society, an elected member of the National Academy of Sciences, the Chilean Academy of Science, the American Academy of Art and Sciences, and a member of the Board of Directors of the American Association for the Advancement of Science. He is the recipient of the 2004 Alexander Hollaender Award in Biophysics of the National Academy of Sciences, 2012 Vilcek Prize and 2012 Raymond and Beverly Sackler International Prize in Biophysics for his seminal contributions to single molecule biophysics.



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